Guide8 min read

Best Accounting Software for South African SMEs (2025)

Choosing the right accounting software can save you hours each month and keep SARS happy. We've compared the top options for SA businesses - here's what you need to know.

Quick Recommendations

Best for payroll

📗 Sage Business Cloud

Best user experience

💙 Xero

Best for freelancers

📄 FreshBooks

Best value

📊 QuickBooks

What to Look For

For South African businesses, there are a few non-negotiables:

  • VAT handling with correct rates (15%) and VAT201 reports
  • Bank feeds with SA banks (FNB, Standard Bank, Nedbank, Absa, Capitec)
  • Multi-currency if you invoice internationally
  • Payroll with UIF, PAYE, and SDL calculations (or good integration with payroll software)
  • Cloud-based for access anywhere and automatic backups

Detailed Comparison

📗

Sage Business Cloud

SA Focused

Best for: Established SA businesses needing payroll

From R299/month

Pros

  • +Built for South Africa - SARS eFiling integration
  • +Comprehensive payroll with UIF, PAYE, SDL
  • +Local support team
  • +Bank feeds with major SA banks

Cons

  • -Interface can feel dated
  • -Higher learning curve
  • -More expensive than alternatives
VAT
Bank Feeds
Payroll
Multi-Currency
Mobile App
Inventory
Try Sage Business Cloud
💙

Xero

SA Focused

Best for: Growing businesses wanting modern UX

From R375/month

Pros

  • +Beautiful, intuitive interface
  • +Excellent SA bank feeds
  • +Strong app ecosystem (200+ integrations)
  • +Great for accountant collaboration

Cons

  • -Payroll requires add-on (SimplePay)
  • -Limited inventory for manufacturers
  • -Support is primarily online
VAT
Bank Feeds
Payroll
Multi-Currency
Mobile App
Inventory
Try Xero
📊

QuickBooks Online

SA Focused

Best for: Freelancers and micro-businesses

From R250/month

Pros

  • +Most affordable entry point
  • +SA-localized with VAT support
  • +Simple invoicing and expenses
  • +Good mobile app

Cons

  • -Fewer SA-specific features than Sage
  • -Basic reporting on lower tiers
  • -Payroll add-on required
VAT
Bank Feeds
Payroll
Multi-Currency
Mobile App
Inventory
Try QuickBooks Online
📄

FreshBooks

Best for: Service-based freelancers and consultants

From $17/month (~R320)

Pros

  • +Best-in-class invoicing
  • +Excellent time tracking
  • +Very easy to learn
  • +Great for client communication

Cons

  • -Not SA-localized (USD pricing)
  • -No payroll
  • -Basic inventory management
  • -VAT handling less robust
VAT
Bank Feeds
Payroll
Multi-Currency
Mobile App
Inventory
Try FreshBooks

Frequently Asked Questions

Do I need SARS-compliant software?

Yes, if you're VAT registered. Your software should handle VAT calculations, produce VAT201 reports, and ideally integrate with SARS eFiling. Sage and Xero are the best options for this.

Can I switch accounting software mid-year?

Yes, but it's easier at year-end. Most software can import your opening balances. Just ensure you export all data from your current system first.

Do I need payroll built-in?

Not necessarily. Many SA businesses use SimplePay or PaySpace alongside Xero or QuickBooks. However, Sage's built-in payroll is excellent if you want everything in one place.

Which is best for working with my accountant?

Xero leads here with its accountant portal and real-time collaboration. Most SA accountants are familiar with all major platforms though.

The Bottom Line

For most South African SMEs, Xero or Sage are the safest choices. Xero wins on user experience and modern features, while Sage wins on built-in payroll and SA-specific compliance features.

If you're a freelancer or consultant primarily sending invoices, FreshBooksoffers the smoothest experience, though you'll pay in USD.

QuickBooks is a solid middle-ground - affordable, capable, and SA-localized, though with fewer advanced features than the others.

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Best Accounting Software for SA SMEs (2025) | Okhantu | Okhantu